Mercurial > repos > ximgchess > chap_test_20230411

changeset 19:cfa3ecde39c4 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty
author ximgchess
date Wed, 12 Apr 2023 11:19:15 +0000
parents 90a3226e70b8
children 2abce09589ba
files tomo/.tomo_reduce.xml.swp tomo/tomo_reduce.xml
diffstat 2 files changed, 8 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
Binary file tomo/.tomo_reduce.xml.swp has changed
--- a/tomo/tomo_reduce.xml	Wed Apr 12 11:09:24 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 11:19:15 2023 +0000
@@ -6,17 +6,19 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code">
         <![CDATA[
-            cp '$tool_config' reduce.yaml &&
-            cp reduce.yaml andor2.yaml &&
-            cat reduce.yaml
+        #if str($map.type_selector) == "yaml"
+            cp '$input_file' map.yaml &&
+            cat andor2.yaml  '$tool_config' > reduce.yaml
+        #else
+            cp '$input_file' setup.nex &&
+            cp '$tool_config' reduce.yaml
+        #end if
+        cat reduce.yaml
         ]]>
     </command>
     <configfiles>
         <configfile name="tool_config">
             <![CDATA[
-#if str($map.type_selector) == "yaml"
-#echo cat andor2.yaml
-#end if
 #echo 'img_x_bounds:' #
 #if str($img_x_bounds.type_selector) == "full_range"
 #echo '- -1' #