# HG changeset patch
# User ximgchess
# Date 1681298355 0
# Node ID cfa3ecde39c46da5651f8539601e07849aa9cf4b
# Parent  90a3226e70b861eae82683e040d7a8336700d4b5
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty

diff -r 90a3226e70b8 -r cfa3ecde39c4 tomo/.tomo_reduce.xml.swp
Binary file tomo/.tomo_reduce.xml.swp has changed
diff -r 90a3226e70b8 -r cfa3ecde39c4 tomo/tomo_reduce.xml
--- a/tomo/tomo_reduce.xml	Wed Apr 12 11:09:24 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 11:19:15 2023 +0000
@@ -6,17 +6,19 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code">
         <![CDATA[
-            cp '$tool_config' reduce.yaml &&
-            cp reduce.yaml andor2.yaml &&
-            cat reduce.yaml
+        #if str($map.type_selector) == "yaml"
+            cp '$input_file' map.yaml &&
+            cat andor2.yaml  '$tool_config' > reduce.yaml
+        #else
+            cp '$input_file' setup.nex &&
+            cp '$tool_config' reduce.yaml
+        #end if
+        cat reduce.yaml
         ]]>
     </command>
     <configfiles>
         <configfile name="tool_config">
             <![CDATA[
-#if str($map.type_selector) == "yaml"
-#echo cat andor2.yaml
-#end if
 #echo 'img_x_bounds:' #
 #if str($img_x_bounds.type_selector) == "full_range"
 #echo '- -1' #