Mercurial > repos > ximgchess > chap_test_20230411
changeset 157:c65408e8fcf1 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit bd55c86b9f7bfabff0bbec1f10704850fec82f02-dirty
| author | ximgchess |
|---|---|
| date | Fri, 30 Jun 2023 13:02:29 +0000 |
| parents | 4d64a29df007 |
| children | 0e0433b1651d |
| files | chapbook_demo/chapbook_demo.xml |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/chapbook_demo/chapbook_demo.xml Fri Jun 30 12:51:28 2023 +0000 +++ b/chapbook_demo/chapbook_demo.xml Fri Jun 30 13:02:29 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy3" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> +<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy4" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> <macros> <import>../macros.xml</import> </macros> @@ -10,7 +10,7 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ pip --exists-action i install certif-pyspec==1.5.3 && - cd '$indir' && + ln -s '$indir/*' '$__tool_directory__'&& CHAP --config '$config' ]]></command> <environment_variables> @@ -21,13 +21,13 @@ <param type="text" name="indir" label="Input Directory" /> </inputs> <outputs> - <data name="data" format="nex" label="I vs q NeXus Data"/> - <data name="plot" format="png" label="I vs q Plot"/> + <data name="data" format="nex" label="I vs q NeXus Data" /> + <data name="plot" format="png" label="I vs q Plot" /> </outputs> <tests> <test> - <param name="config" value="config.yaml"/> - <param name="indir" value="/tmp/"/> + <param name="config" value="config.yaml" /> + <param name="indir" value="/tmp/" /> </test> </tests> <help><![CDATA[