# HG changeset patch
# User ximgchess
# Date 1688130149 0
# Node ID c65408e8fcf1fb7ac37921e601a33558128445cc
# Parent  4d64a29df0074703f20475950da9a7d047e86d74
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit bd55c86b9f7bfabff0bbec1f10704850fec82f02-dirty

diff -r 4d64a29df007 -r c65408e8fcf1 chapbook_demo/chapbook_demo.xml
--- a/chapbook_demo/chapbook_demo.xml	Fri Jun 30 12:51:28 2023 +0000
+++ b/chapbook_demo/chapbook_demo.xml	Fri Jun 30 13:02:29 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy3" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@">
+<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy4" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@">
   <macros>
     <import>../macros.xml</import>
   </macros>
@@ -10,7 +10,7 @@
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
       pip --exists-action i install certif-pyspec==1.5.3 &&
-      cd '$indir' &&
+      ln -s '$indir/*' '$__tool_directory__'&&
       CHAP --config '$config'
 ]]></command>
   <environment_variables>
@@ -21,13 +21,13 @@
       <param type="text" name="indir" label="Input Directory" />
   </inputs>
   <outputs>
-      <data name="data" format="nex" label="I vs q NeXus Data"/>
-      <data name="plot" format="png" label="I vs q Plot"/>
+      <data name="data" format="nex" label="I vs q NeXus Data" />
+      <data name="plot" format="png" label="I vs q Plot" />
   </outputs>
   <tests>
       <test>
-          <param name="config" value="config.yaml"/>
-	  <param name="indir" value="/tmp/"/>
+          <param name="config" value="config.yaml" />
+	  <param name="indir" value="/tmp/" />
       </test>
   </tests>
   <help><![CDATA[