Mercurial > repos > ximgchess > chap_test_20230411

view tomo/pipeline_reconstruct.yaml @ 67:f751fb2b1985 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
author ximgchess
date Mon, 24 Apr 2023 17:35:54 +0000
parents 3b1dbe3fb91b
children dedb67bd8d6e
line wrap: on
line source

pipeline:

  # Reconstruct tomography stacks
  - common.MultipleReader:
      readers:
        - NexusReader:
            filename: reduced.nxs
        - YAMLReader:
            filename: reconstruct.yaml
            schema: TomoReconstructConfig
        - YAMLReader:
            filename: centers.yaml
            schema: TomoFindCenterConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reconstruct_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nxs
      force_overwrite: true