Mercurial > repos > ximgchess > chap_test_20230411

annotate tomo/pipeline_reconstruct.yaml @ 67:f751fb2b1985 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
author ximgchess
date Mon, 24 Apr 2023 17:35:54 +0000
parents 3b1dbe3fb91b
children dedb67bd8d6e
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66
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
1 pipeline:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
2
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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3 # Reconstruct tomography stacks
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
4 - common.MultipleReader:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
5 readers:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
6 - NexusReader:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
7 filename: reduced.nxs
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
8 - YAMLReader:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
9 filename: reconstruct.yaml
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
10 schema: TomoReconstructConfig
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
11 - YAMLReader:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
12 filename: centers.yaml
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
13 schema: TomoFindCenterConfig
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
14 - tomo.TomoDataProcessor:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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15 output_folder: tomo_reconstruct_plots
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
16 save_figs: 'only'
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
17 - common.NexusWriter:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
18 filename: output.nxs
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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19 force_overwrite: true