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view tomo/pipeline_reduce_nexus.yaml @ 72:efb4a65f46eb draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
author ximgchess
date Mon, 24 Apr 2023 19:49:26 +0000
parents 2679014bb6eb
children 72608a06dd7f
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pipeline:

  # Reduce tomography images
  - common.MultipleReader:
      readers:
        - NexusReader:
            filename: setup.nex
        - YAMLReader:
            filename: reduce.yaml
            schema: TomoReduceConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reduce_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true