view saxswaxs/reduce.xml @ 38:aa625ead053f draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit eda217fb0afe5af50380a24b578c668db9c004f4-dirty

<tool id="CHAP_saxswaxs_reduce" name="SAXSWAXS Reduce Map" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05">
    <requirements>
      <requirement type="package" version="0.0.3">chessanalysispipeline</requirement>
      <requirement type="package" version="2.28.1">requests</requirement>
      <requirement type="package" version="2023.3.0">pyfai</requirement>
      <requirement type="package" version="1.10.7">pydantic</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        pip --exists-action i install certif-pyspec==1.5.3 &&
        cp '$mapconfig' map.yaml &&
	cp '$integrationconfig' integration.yaml &&
	CHAP --config '$__tool_directory__/pipeline.yaml'
    ]]></command>
    <inputs>
        <param type="data" name="mapconfig" format="yaml" />
        <param type="data" name="integrationconfig" format="yaml" />
    </inputs>
    <outputs>
        <data name="specdata" label="Map of SPEC data" format="nex" from_work_dir="map_specdata.nxs"/>
	<data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/>
    </outputs>
    <tests>
        <test>
            <param name="mapconfig" value="map.yaml"/>
            <param name="integrationconfig" value="integration.yaml"/>
            <output name="specdata" value="map_specdata.nxs"/>
            <output name="reduceddata" value="map_reduceddata.nxs"/>
        </test>
    </tests>
    <help><![CDATA[
        usage: PROG [-h] [--config CONFIG] [--verbose]

options:
  -h, --help       show this help message and exit
  --config CONFIG  Input configuration file
  --verbose        verbose output

    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{githubChessAnalysisPipeline,
  author = {LastTODO, FirstTODO},
  year = {TODO},
  title = {CHAPSAXSWAXSdemo},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/CHESSComputing/ChessAnalysisPipeline},
}</citation>
    </citations>
</tool>