Mercurial > repos > ximgchess > chap_test_20230411

annotate tomo/pipeline_combine.yaml @ 91:72608a06dd7f draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
author ximgchess
date Wed, 24 May 2023 11:57:05 +0000
parents dedb67bd8d6e
children c63315c31cef
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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66
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
1 pipeline:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
2
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
3 # Combine tomography stacks
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72608a06dd7f planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
ximgchess
parents: 74
diff changeset
4 - pipeline.MultiplePipelineItem:
72608a06dd7f planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
ximgchess
parents: 74
diff changeset
5 items:
72608a06dd7f planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
ximgchess
parents: 74
diff changeset
6 - common.NexusReader:
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dedb67bd8d6e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
ximgchess
parents: 66
diff changeset
7 filename: reconstructed.nex
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72608a06dd7f planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
ximgchess
parents: 74
diff changeset
8 - common.YAMLReader:
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
9 filename: combine.yaml
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
10 schema: TomoCombineConfig
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
11 - tomo.TomoDataProcessor:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
12 output_folder: tomo_combine_plots
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
13 save_figs: 'only'
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
14 - common.NexusWriter:
74
dedb67bd8d6e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
ximgchess
parents: 66
diff changeset
15 filename: output.nex
66
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
16 force_overwrite: true