Mercurial > repos > ximgchess > chap_test_20230411

annotate tomo/pipeline_reduce_nexus.yaml @ 94:5479b4b4f0e6 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7-dirty
author ximgchess
date Wed, 24 May 2023 14:41:10 +0000
parents c63315c31cef
children 3283cbddcc1d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
1 pipeline:
84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
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84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
3 # Reduce tomography images
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c63315c31cef planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7
ximgchess
parents: 91
diff changeset
4 - common.MultipleReader:
c63315c31cef planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7
ximgchess
parents: 91
diff changeset
5 readers:
c63315c31cef planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7
ximgchess
parents: 91
diff changeset
6 - NexusReader:
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84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
7 filename: setup.nex
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c63315c31cef planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7
ximgchess
parents: 91
diff changeset
8 - YAMLReader:
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84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
9 filename: reduce.yaml
84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
10 schema: TomoReduceConfig
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2679014bb6eb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit e280dd942513f966a9a61a3af68ee7972fb8992f-dirty
ximgchess
parents: 1
diff changeset
11 - tomo.TomoDataProcessor:
2679014bb6eb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit e280dd942513f966a9a61a3af68ee7972fb8992f-dirty
ximgchess
parents: 1
diff changeset
12 output_folder: tomo_reduce_plots
2679014bb6eb planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit e280dd942513f966a9a61a3af68ee7972fb8992f-dirty
ximgchess
parents: 1
diff changeset
13 save_figs: 'only'
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84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
14 - common.NexusWriter:
84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
15 filename: output.nex
84a215623d9e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit f4980be19456f3f51758e06e2eb7520924ce1e3a
ximgchess
parents:
diff changeset
16 force_overwrite: true