Mercurial > repos > ximgchess > chap_test_20230411

annotate saxswaxs/reduce.xml @ 137:0bd8fb3aae96 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
author ximgchess
date Tue, 20 Jun 2023 18:13:36 +0000
parents 49985da419b8
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1 <tool id="CHAP_saxswaxs_reduce" name="SAXSWAXS Reduce Map" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@">
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2 <macros>
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3 <import>../macros.xml</import>
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4 </macros>
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5 <requirements>
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6 <expand macro="chap-requirement" />
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7 <requirement type="package" version="1.0.1">nexusformat</requirement>
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8 <requirement type="package" version="2023.3.0">pyfai</requirement>
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9 <requirement type="package" version="1.10.7">pydantic</requirement>
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10 </requirements>
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11 <command detect_errors="exit_code"><![CDATA[
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12 pip --exists-action i install certif-pyspec==1.5.3 &&
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13 cp '$mapconfig' map.yaml &&
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14 cp '$integrationconfig' integration.yaml &&
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15 CHAP --config '$__tool_directory__/pipeline.yaml'
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16 ]]></command>
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17 <inputs>
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18 <param type="data" name="mapconfig" format="yaml" />
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19 <param type="data" name="integrationconfig" format="yaml" />
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20 </inputs>
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21 <outputs>
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22 <data name="reduceddata" label="Map of reduced data" format="nex" from_work_dir="map_reduceddata.nxs"/>
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23 </outputs>
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24 <tests>
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25 <test>
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26 <param name="mapconfig" value="map.yaml"/>
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27 <param name="integrationconfig" value="integration.yaml"/>
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28 <output name="reduceddata" value="map_reduceddata.nxs"/>
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29 </test>
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30 </tests>
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31 <help><![CDATA[
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32 usage: PROG [-h] [--config CONFIG] [--verbose]
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34 options:
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35 -h, --help show this help message and exit
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36 --config CONFIG Input configuration file
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37 --verbose verbose output
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38
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39 ]]></help>
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40 <citations>
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41 <expand macro="chap-citation" />
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42 </citations>
0
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43 </tool>