Mercurial > repos > wolma > rnastar_index_builder
changeset 5:bb74adafc98f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 93138516106c74b1ccc70d2d946e6eaa29c7c1a3-dirty
| author | wolma |
|---|---|
| date | Wed, 16 Oct 2019 04:24:41 -0400 |
| parents | 039890bdcb62 |
| children | |
| files | data_manager/rna_star_index_builder.py data_manager_conf.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/rna_star_index_builder.py Wed Oct 16 03:33:53 2019 -0400 +++ b/data_manager/rna_star_index_builder.py Wed Oct 16 04:24:41 2019 -0400 @@ -34,7 +34,7 @@ "value": args.value, "dbkey": args.dbkey, "name": args.name, - "subdir": args.subdir, + "path": args.subdir, "with_gene_model": with_gene_model, "version": args.index_version }
--- a/data_manager_conf.xml Wed Oct 16 03:33:53 2019 -0400 +++ b/data_manager_conf.xml Wed Oct 16 04:24:41 2019 -0400 @@ -12,9 +12,9 @@ out_file.extra_files_path is used as base by default if no source, eg for type=directory, then refers to base --> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}/${subdir}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}/${subdir}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> <column name="with_gene_model" />