Mercurial > repos > wolma > package_mimodd_0_1_3
changeset 12:62b1fb15110a draft
Uploaded
| author | wolma |
|---|---|
| date | Thu, 14 Aug 2014 09:21:42 -0400 |
| parents | 117928009310 |
| children | 8a7440a2da29 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 2 insertions(+), 11 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed Aug 13 11:44:46 2014 -0400 +++ b/tool_dependencies.xml Thu Aug 14 09:21:42 2014 -0400 @@ -10,7 +10,7 @@ <package name="mimodd" version="0.1.3"> <install version="1.0"> <actions> - <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.3.1.tar.gz</action> + <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.3.2-toolshed.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="79f0803e3bbb" name="package_python3_zlib_dependent_1_0" owner="wolma" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="python3" version="3.4.1" /> @@ -22,16 +22,7 @@ </repository> </action> <action type="shell_command">pyvenv $INSTALL_DIR/MiModD_venv</action> - <action type="move_directory_files"> - <source_directory>.</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - <action type="move_directory_files"> - <source_directory>/home/galaxy/samtools-0.1.19</source_directory> - <destination_directory>$INSTALL_DIR/MiModD-0.1.3.1/pysam/samtools</destination_directory> - </action> - <action type="change_directory">$INSTALL_DIR/MiModD-0.1.3.1</action> - <action type="shell_command">python3 setup.py install --install-scripts $INSTALL_DIR/bin</action> + <action type="shell_command">$INSTALL_DIR/MiModD_venv/python3 setup.py install --install-scripts $INSTALL_DIR/bin</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action>