Mercurial > repos > wolma > package_mimodd

changeset 0:9752287eabab draft

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Uploaded
author wolma
date Tue, 12 Aug 2014 12:24:56 -0400
parents
children c175a9b6c789
files tool_dependencies.xml
diffstat 1 files changed, 30 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Aug 12 12:24:56 2014 -0400
@@ -0,0 +1,30 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python3" version="3.4.1">
+        <repository changeset_revision="ecf7415d602c" name="package_python3" owner="wolma" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="mimodd" version="0.1.3_9af04e0e9125">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.3.1.tar.gz/download</action>
+                <action type="shell_command">tar -xzf MiModD-0.1.3.1.tar.gz</action>
+                <action type="shell_command">cd $INSTALL_DIR/MiModD-0.1.3.1</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="ecf7415d602c" name="package_python3" owner="wolma" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="python3" version="3.4.1" />
+                    </repository>
+                </action>
+
+                <action type="shell_command">pyvenv MiModD_venv</action>
+                <action type="shell command">python3 setup.py install --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            MiModD wraps samtools and as such requires the zlib development library.
+        </readme>
+    </package>
+</tool_dependency>