comparison tool_dependencies.xml @ 0:9752287eabab draft

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0:9752287eabab

<?xml version="1.0"?>
<tool_dependency>
    <package name="python3" version="3.4.1">
        <repository changeset_revision="ecf7415d602c" name="package_python3" owner="wolma" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="mimodd" version="0.1.3_9af04e0e9125">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.3.1.tar.gz/download</action>
                <action type="shell_command">tar -xzf MiModD-0.1.3.1.tar.gz</action>
                <action type="shell_command">cd $INSTALL_DIR/MiModD-0.1.3.1</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="ecf7415d602c" name="package_python3" owner="wolma" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="python3" version="3.4.1" />
                    </repository>
                </action>

                <action type="shell_command">pyvenv MiModD_venv</action>
                <action type="shell command">python3 setup.py install --install-scripts $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            MiModD wraps samtools and as such requires the zlib development library.
        </readme>
    </package>
</tool_dependency>