|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="python3" version="3.4.1">
|
|
|
4 <repository changeset_revision="ecf7415d602c" name="package_python3" owner="wolma" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6
|
|
|
7 <package name="mimodd" version="0.1.3_9af04e0e9125">
|
|
|
8 <install version="1.0">
|
|
|
9 <actions>
|
|
1
|
10 <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.3.1.tar.gz</action>
|
|
0
|
11 <action type="shell_command">tar -xzf MiModD-0.1.3.1.tar.gz</action>
|
|
|
12 <action type="shell_command">cd $INSTALL_DIR/MiModD-0.1.3.1</action>
|
|
|
13 <action type="set_environment_for_install">
|
|
|
14 <repository changeset_revision="ecf7415d602c" name="package_python3" owner="wolma" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
15 <package name="python3" version="3.4.1" />
|
|
|
16 </repository>
|
|
|
17 </action>
|
|
|
18
|
|
|
19 <action type="shell_command">pyvenv MiModD_venv</action>
|
|
|
20 <action type="shell command">python3 setup.py install --install-scripts $INSTALL_DIR/bin</action>
|
|
|
21 <action type="set_environment">
|
|
|
22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
23 </action>
|
|
|
24 </actions>
|
|
|
25 </install>
|
|
|
26 <readme>
|
|
|
27 MiModD wraps samtools and as such requires the zlib development library.
|
|
|
28 </readme>
|
|
|
29 </package>
|
|
|
30 </tool_dependency>
|
