Mercurial > repos > wolma > mimodd
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author | wolma |
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date | Tue, 12 Aug 2014 11:26:15 -0400 |
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<tool id="sampleinfo" name="Retrieve Sample Information"> <description>for supported data formats.</description> <requirements> <requirement type="package" version="3.4.1">python3</requirement> <requirement type="package" version="0.1.3_9af04e0e9125">MiModD</requirement> </requirements> <command> mimodd info $ifile -o $outputfile --verbose </command> <inputs> <param name="ifile" type="data" format="bam,sam,vcf,tabular" label="input file" /> </inputs> <outputs> <data name="outputfile" format="txt" label="Sample Info on ${on_string}"/> </outputs> <help> .. class:: infomark **What it does** The tool inspects the input file and writes a report about the samples (and read groups) encoded in it. It works with all file formats used and supported by MiModD that contain sample metadata, i.e. headered SAM/BAM files, vcf files with sample information and the cov files produced during Coverage Analysis. </help> </tool>