comparison sampleinfo.xml @ 0:7da2c9654a83 draft default tip

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0:7da2c9654a83

<tool id="sampleinfo" name="Retrieve Sample Information">
  <description>for supported data formats.</description>
  <requirements>
    <requirement type="package" version="3.4.1">python3</requirement>
    <requirement type="package" version="0.1.3_9af04e0e9125">MiModD</requirement>
  </requirements>
  <command>
    mimodd info $ifile -o $outputfile --verbose
  </command>

  <inputs>
    <param name="ifile" type="data" format="bam,sam,vcf,tabular" label="input file" />
  </inputs>

  <outputs>
    <data name="outputfile" format="txt" label="Sample Info on ${on_string}"/>
  </outputs>

<help>
.. class:: infomark

   **What it does**

The tool inspects the input file and writes a report about the samples (and read groups) encoded in it.

It works with all file formats used and supported by MiModD that contain sample metadata, i.e. headered SAM/BAM files, vcf files with sample information and the cov files produced during Coverage Analysis.

</help>
</tool>