diff docs/usage.rst @ 7:096c6bbf4a04

Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Thu, 13 Aug 2015 15:03:20 +0100
parents 8e1efafa6277
children 844eb8c36f32
line wrap: on
line diff
--- a/docs/usage.rst	Wed Aug 12 16:28:43 2015 +0100
+++ b/docs/usage.rst	Thu Aug 13 15:03:20 2015 +0100
@@ -2,6 +2,15 @@
 Usage
 ========
 
-To use RiboPlot in a project::
+RiboPlot
+--------
+Plot and output Ribo-Seq read counts of a single transcript from an alignment file (sorted BAM).
 
-    import riboplot
\ No newline at end of file
+Parameters
+..........
+1. Ribo-Seq alignment file (sorted BAM)
+   A bowtie 1 
+
+RiboCount
+---------
+