Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison docs/usage.rst @ 7:096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
| author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
|---|---|
| date | Thu, 13 Aug 2015 15:03:20 +0100 |
| parents | 8e1efafa6277 |
| children | 844eb8c36f32 |
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| 6:2ffa8172dce1 | 7:096c6bbf4a04 |
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| 1 ======== | 1 ======== |
| 2 Usage | 2 Usage |
| 3 ======== | 3 ======== |
| 4 | 4 |
| 5 To use RiboPlot in a project:: | 5 RiboPlot |
| 6 -------- | |
| 7 Plot and output Ribo-Seq read counts of a single transcript from an alignment file (sorted BAM). | |
| 6 | 8 |
| 7 import riboplot | 9 Parameters |
| 10 .......... | |
| 11 1. Ribo-Seq alignment file (sorted BAM) | |
| 12 A bowtie 1 | |
| 13 | |
| 14 RiboCount | |
| 15 --------- | |
| 16 |