Mercurial > repos > ulfschaefer > data_manager_phemost
changeset 1:7cdb144f6682 draft
Uploaded
| author | ulfschaefer |
|---|---|
| date | Mon, 11 Jul 2016 05:25:50 -0400 |
| parents | c01ac945b067 |
| children | d5b579102414 |
| files | data_manager_conf.xml |
| diffstat | 1 files changed, 5 insertions(+), 6 deletions(-) [+] |
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--- a/data_manager_conf.xml Mon Jul 11 05:23:33 2016 -0400 +++ b/data_manager_conf.xml Mon Jul 11 05:25:50 2016 -0400 @@ -1,14 +1,14 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="data_manager/fetch_mlst_data.xml" id="fetch_mlst_data" version="1.0.0"><!-- Defines a single Data Manager Tool that can update one or more Data Tables --> - <data_table name="mlst_data"> <!-- Defines a Data Table to be modified. --> - <output> <!-- Handle the output of the Data Manager Tool --> + <data_manager tool_file="data_manager/fetch_mlst_data.xml" id="fetch_mlst_data" version="1.0.0"> + <data_table name="mlst_data"> + <output> <column name="value" /> <column name="dbkey" /> <column name="name" /> <column name="time_stamp" /> - <column name="file_path" output_ref="out_file" > <!-- The value of this column will be modified based upon data in "out_file". example value "phiX.fa" --> - <move type="directory"> <!-- Moving a file from the extra files path of "out_file" --> + <column name="file_path" output_ref="out_file" > + <move type="directory"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mlst_data</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mlst_data/${dbkey}/${time_stamp}</value_translation> <!-- Store this value in the final Data Table --> @@ -16,6 +16,5 @@ </column> </output> </data_table> - <!-- additional data_tables can be configured from a single Data Manager --> </data_manager> </data_managers>