comparison data_manager_conf.xml @ 1:7cdb144f6682 draft

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0:c01ac945b067

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/fetch_mlst_data.xml" id="fetch_mlst_data" version="1.0.0"><!-- Defines a single Data Manager Tool that can update one or more Data Tables -->
        <data_table name="mlst_data"> <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="time_stamp" />
                <column name="file_path" output_ref="out_file" >  <!-- The value of this column will be modified based upon data in "out_file". example value "phiX.fa" -->
                    <move type="directory"> <!-- Moving a file from the extra files path of "out_file" -->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mlst_data</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mlst_data/${dbkey}/${time_stamp}</value_translation> <!-- Store this value in the final Data Table -->
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <!-- additional data_tables can be configured from a single Data Manager -->
    </data_manager>
</data_managers>

1:7cdb144f6682

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/fetch_mlst_data.xml" id="fetch_mlst_data" version="1.0.0">
        <data_table name="mlst_data">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="time_stamp" />
                <column name="file_path" output_ref="out_file" >
                    <move type="directory">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mlst_data</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mlst_data/${dbkey}/${time_stamp}</value_translation> <!-- Store this value in the final Data Table -->
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>