Mercurial > repos > trinity_ctat > ctat_trinity_rnaseq
changeset 3:777b35c8ee3e draft default tip
Trying newer trinity
| author | trinity_ctat |
|---|---|
| date | Mon, 25 Jun 2018 16:38:28 -0400 |
| parents | 8291ea96690f |
| children | |
| files | ctat_trinity_rnaseq.xml |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/ctat_trinity_rnaseq.xml Fri Apr 13 08:00:01 2018 -0400 +++ b/ctat_trinity_rnaseq.xml Mon Jun 25 16:38:28 2018 -0400 @@ -4,16 +4,15 @@ later development/maintenance by (in chronological order) Brian Haas, Ben Fulton, Cicada Dennis --> - <description>De novo assembly of RNA-Seq data using Trinity 2.4.0</description> + <description>De novo assembly of RNA-Seq data using Trinity</description> <requirements> <requirement type="package" version="2.7">python</requirement> <requirement type="package">subprocess32</requirement> - <requirement type="package">samtools</requirement> <requirement type="package">bzip2</requirement> <requirement type="package" version="1.3.0">rsem</requirement> <requirement type="package" version="3">bioconductor-edger</requirement> <requirement type="package" version="2">bioconductor-qvalue</requirement> - <requirement type="package" version="2.5.1">trinity</requirement> + <requirement type="package" version="2.6.6">trinity</requirement> </requirements> <command detect_errors="default"> <![CDATA[ @@ -134,7 +133,7 @@ </test> </tests> <help> -This instance is running Trinity version 2.4.0 and uses the following command: +This instance runs Trinity with the following command: Trinity --max_memory 31G --CPU 4 --seqType seq_type --single singlefile or --left left_file --right right_file