Mercurial > repos > trinity_ctat > ctat_star_fusion
changeset 9:690a6696ce11 draft
Uploaded
author | trinity_ctat |
---|---|
date | Fri, 06 Jul 2018 13:12:54 -0400 |
parents | 3e375492af68 |
children | fe24128ef413 |
files | ctat_star_fusion.xml |
diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/ctat_star_fusion.xml Thu Jul 05 11:56:35 2018 -0400 +++ b/ctat_star_fusion.xml Fri Jul 06 13:12:54 2018 -0400 @@ -20,6 +20,7 @@ --left_fq "${left_input}" --right_fq "${right_input}" --output_dir subdir + --STAR_SortedByCoordinate ]]> </command> @@ -36,8 +37,8 @@ <outputs> <data format="txt" name="starfusion_log" label="${tool.name} on ${on_string}: log" from_work_dir="subdir/Log.out"/> - <data format="bam" name="aligned_bam" label="${tool.name} on ${on_string}: Aligned Bam" from_work_dir="subdir/std.STAR.bam"/> - <data format="tabular" name="candidates" label="${tool.name} on ${on_string}: Fusion candidates" from_work_dir="subdir/star-fusion.fusion_predictions.abridged.tsv"/> + <data format="bam" name="aligned_bam" label="${tool.name} on ${on_string}: Aligned Bam" from_work_dir="subdir/Aligned.sortedByCoord.out.bam"/> + <data format="tabular" name="candidates" label="${tool.name} on ${on_string}: Fusion candidates" from_work_dir="subdir/star-fusion.fusion_candidates.final.abridged"/> <data format="tabular" name="chimeric_junc" label="${tool.name} on ${on_string}: Chimeric.out.junction" from_work_dir="subdir/Chimeric.out.junction"/> </outputs> <tests>