Mercurial > repos > trinity_ctat > ctat_lncrna
changeset 9:f4fe52ab2ead draft
Uploaded
| author | trinity_ctat |
|---|---|
| date | Tue, 03 Jul 2018 10:52:16 -0400 |
| parents | bddb36ef9fb3 |
| children | f3f722c9dbf8 |
| files | ctat_lncrna.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/ctat_lncrna.xml Wed Jun 27 14:09:46 2018 -0400 +++ b/ctat_lncrna.xml Tue Jul 03 10:52:16 2018 -0400 @@ -8,11 +8,11 @@ <![CDATA[ #if str($bedfile) != "": lncrna --bedfile $bedfile - --config "${annotations.fields.path}" + --config "${assembly.fields.path}" #end if #if str($assembly) != "": - --assembly "$assembly" + --assembly "${assembly.fields.value}" #end if #if $min_overlap != "": @@ -57,7 +57,7 @@ <param name="pad" type="integer" value="0" label="Pad" help="No. of basepairs to search up- and down-stream when lifting over lnc to ortholog" /> <param name="gap_open" type="text" value="200" label="Gap open penalty to pass to lastz" help="Decreasing this parameter will increase sensitivity of orthology search"/> <param name="gap_extend" type="text" value="40" label="Gap extend penalty to pass to lastz" help="Decreasing this parameter will increase sensitivity of orthology search."/> - <param name="annotations" type="select" label="Choose annotation:" help="Select annotation"> + <param name="assembly" type="select" label="Choose annotation:" help="Select annotation"> <options from_data_table="ctat_lncrna_annotations" /> </param> </inputs>