Mercurial > repos > trinity_ctat > ctat_lncrna

changeset 4:2847714632d9 draft

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Uploaded
author trinity_ctat
date Fri, 22 Jun 2018 12:33:26 -0400
parents 80b2cedf1a6f
children ebee170e977b
files ctat_lncrna.xml
diffstat 1 files changed, 4 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/ctat_lncrna.xml	Thu Jun 21 19:02:30 2018 -0400
+++ b/ctat_lncrna.xml	Fri Jun 22 12:33:26 2018 -0400
@@ -11,6 +11,10 @@
      --config "${assembly.fields.path}" 
      #end if
 
+     --bedtools "$CONDA_DEFAULT_ENV/bin" 
+     --lastz "$CONDA_DEFAULT_ENV/bin"
+     --liftover "$CONDA_DEFAULT_ENV/bin"
+
      #if str($assembly) != "":
          --assembly "${assembly.fields.value}"
      #end if