Mercurial > repos > trinity_ctat > ctat_lncrna

changeset 6:0d9726320598 draft

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Uploaded
author trinity_ctat
date Fri, 22 Jun 2018 15:07:31 -0400
parents ebee170e977b
children 018041e308fe
files ctat_lncrna.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/ctat_lncrna.xml	Fri Jun 22 14:07:59 2018 -0400
+++ b/ctat_lncrna.xml	Fri Jun 22 15:07:31 2018 -0400
@@ -11,9 +11,9 @@
      --config "${assembly.fields.path}" 
      #end if
 
-     --bedtools "${CONDA_DEFAULT_ENV}/bin" 
-     --lastz "${CONDA_DEFAULT_ENV}/bin"
-     --liftover "${CONDA_DEFAULT_ENV}/bin"
+     --bedtools "$tool_dependency_dir/_conda" 
+     --lastz "$tool_dependency_dir/_conda"
+     --liftover "$tool_dependency_dir/_conda"
 
      #if str($assembly) != "":
          --assembly "${assembly.fields.value}"