Mercurial > repos > trinity_ctat > ctat_genome_resource_libs_data_manager_3
changeset 54:9c15dc3c0aa3 draft
Uploaded
| author | trinity_ctat |
|---|---|
| date | Tue, 06 Nov 2018 14:00:08 -0500 |
| parents | 9fdaeb356e22 |
| children | 33b9881654bc |
| files | data_manager/add_ctat_resource_lib.py |
| diffstat | 1 files changed, 8 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/data_manager/add_ctat_resource_lib.py Tue Nov 06 13:52:46 2018 -0500 +++ b/data_manager/add_ctat_resource_lib.py Tue Nov 06 14:00:08 2018 -0500 @@ -1555,15 +1555,17 @@ # Create the data table for the cravat_tissues, if the file is given: print "The cravat tissues file is: {:s}".format(str(args.cravat_tissues_filepath)) - if False and (args.cravat_tissues_filepath is not None) and (args.cravat_tissues_filepath != ""): + if (args.cravat_tissues_filepath is not None) and (args.cravat_tissues_filepath != ""): data_manager_dict['data_tables']['ctat_cravat_tissues'] = [] cravat_file = open(args.cravat_tissues_filepath, 'r') + print len(cravat_file) for line in cravat_file: - if line[0] != '#': - # The line is not a comment, so parse it. - items = [item.strip() for item in line.split("\t")] - data_table_entry = dict(value=items[0], name=items[1], code=items[2], date=items[3]) - data_manager_dict['data_tables']['ctat_cravat_tissues'].append(data_table_entry) + print line + #if line[0] != '#': + # # The line is not a comment, so parse it. + # items = [item.strip() for item in line.split("\t")] + # data_table_entry = dict(value=items[0], name=items[1], code=items[2], date=items[3]) + # data_manager_dict['data_tables']['ctat_cravat_tissues'].append(data_table_entry) # Temporarily the output file's dictionary is written for debugging: print "The dictionary for the output file is:\n\t{:s}".format(str(data_manager_dict))