Mercurial > repos > trinity_ctat > ctat_genome_resource_libs_data_manager_3
changeset 45:3acb7bc809b5 draft
More print statement fixes.
| author | trinity_ctat |
|---|---|
| date | Thu, 25 Oct 2018 17:38:12 -0400 |
| parents | 76f2367996b8 |
| children | f4f48007db67 |
| files | data_manager/add_ctat_resource_lib.py |
| diffstat | 1 files changed, 5 insertions(+), 0 deletions(-) [+] |
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--- a/data_manager/add_ctat_resource_lib.py Thu Oct 25 17:30:36 2018 -0400 +++ b/data_manager/add_ctat_resource_lib.py Thu Oct 25 17:38:12 2018 -0400 @@ -11,6 +11,7 @@ # if they don't want to add them by hand. import sys +# The many calls to sys.stdout.flush() are done in order to get the output to be synchronized. import argparse import os import shutil @@ -735,6 +736,7 @@ sys.stdout.flush() raise finally: + sys.stdout.flush() # Some code to help us if errors occur. print "\n*******************************\nAfter running gmap_build." sys.stdout.flush() @@ -858,7 +860,9 @@ # We might still need to do a gmap_build. if gmap_build: print "Checking if we need to gmap the library." + sys.stdout.flush() gmap_the_library(cannonical_destination, force_gmap_build) + sys.stdout.flush() # gmap_the_library creates a gmap success file if it succeeds. else: print "build_the_library(): This code should never be printed. Something is wrong." @@ -1455,6 +1459,7 @@ # If we did not build the genome resource library # the user might still be asking for a gmap_build. gmap_the_library(genome_build_directory, args.force_gmap_build) + sys.stdout.flush() if (args.download_mutation_resources_url != ""): download_and_integrate_mutation_resources(source_url=args.download_mutation_resources_url, \