Mercurial > repos > trinity_ctat > ctat_centrifuge_index_data_manager2
changeset 1:8f5e700757f3 draft
Uploaded
| author | trinity_ctat |
|---|---|
| date | Fri, 27 Apr 2018 10:29:42 -0400 |
| parents | 1e765fd74cfd |
| children | 772b977ac9a1 |
| files | data_manager/add_ctat_centrifuge_index.py |
| diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/add_ctat_centrifuge_index.py Fri Apr 27 10:18:44 2018 -0400 +++ b/data_manager/add_ctat_centrifuge_index.py Fri Apr 27 10:29:42 2018 -0400 @@ -33,6 +33,7 @@ _CTAT_CentrifugeIndexPage_URL = 'https://ccb.jhu.edu/software/centrifuge/' _CTAT_CentrifugeDownload_URL = 'ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz' +_CTAT_CentrifugeIndexTableName = 'ctat_centrifuge_indexes' _CTAT_CentrifugeDir_Name = 'p_compressed+h+v' _CTAT_Centrifuge_DisplayNamePrefix = 'CTAT_CentrifugeIndex_' _CentrifugeIndexFileExtension = 'cf' @@ -332,9 +333,9 @@ data_manager_dict = {} data_manager_dict['data_tables'] = {} - data_manager_dict['data_tables']['ctat_centrifuge_index'] = [] + data_manager_dict['data_tables'][_CTAT_CentrifugeIndexTableName] = [] data_table_entry = dict(value=unique_id, name=display_name, path=index_directory) - data_manager_dict['data_tables']['ctat_centrifuge_index'].append(data_table_entry) + data_manager_dict['data_tables'][_CTAT_CentrifugeIndexTableName].append(data_table_entry) # Temporarily the output file's dictionary is written for debugging: print "The dictionary for the output file is:\n\t{:s}".format(str(data_manager_dict))