Mercurial > repos > trinity_ctat > ctat_analyze_differential_expression
changeset 3:68c6c52d2ced draft
Uploaded
author | trinity_ctat |
---|---|
date | Thu, 28 Jun 2018 22:45:26 -0400 |
parents | ab08b6af7710 |
children | b37d57c8ce7e |
files | ctat_analyze_differential_expression.xml |
diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/ctat_analyze_differential_expression.xml Wed Jun 27 14:10:05 2018 -0400 +++ b/ctat_analyze_differential_expression.xml Thu Jun 28 22:45:26 2018 -0400 @@ -8,16 +8,18 @@ <requirement type="package" version="1.3.0">rsem</requirement> <requirement type="package" version="3">bioconductor-edger</requirement> <requirement type="package" version="2">bioconductor-qvalue</requirement> + <requirement type="package">r-cluster</requirement> + <requirement type="package">r-fastcluster</requirement> <requirement type="package" version="2.6.6">trinity</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ - python $__tool_directory__/ctat_analyze_differential_expression.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue + python $__tool_directory__/ctat_analyze_differential_expression.py $Counts_matrix $TMM_Matrix_FPKM $Pvalue $Cvalue ]]> </command> <inputs> <param name="EdgeRTarGz" label="EdgeR tar gz file" type="data" format="txt"/> - <param name="TMM_Matrix_FPKM" label="TMM Normalized FPKM matrix" type="data" format="tabular" /> + <param name="Counts_matrix" label="Counts Matrix" type="data" format="tabular" /> <param name="Pvalue" label="P-value" value="0.05" type="float" /> <param name="Cvalue" label="C-value" value="0" type="float" />