Mercurial > repos > trinity_ctat > concatenate

changeset 1:1e638acde0cf draft

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Test concatenate changes
author trinity_ctat
date Fri, 15 Sep 2017 15:28:26 -0400
parents 7a974f285033
children 2a3972086548
files concatenate.xml
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/concatenate.xml	Mon Sep 11 16:40:43 2017 -0400
+++ b/concatenate.xml	Fri Sep 15 15:28:26 2017 -0400
@@ -1,12 +1,16 @@
 <tool id="catbash" name="Concatenate datasets">
     <description> concatenate datasets from tail to head</description>
-    <command interpreter="python">
-        bash_command_executer.py cat
+    <!--    bash_command_executer.py cat
+    -->
+    <command>
+      <![CDATA[
+        cat
         $input1
         #for $q in $queries
             ${q.input2}
         #end for
         > $out_file1 
+      ]]>
     </command>
     <inputs>
         <param name="input1" type="data" label="Concatenate Dataset"/>