Mercurial > repos > trinity_ctat > align_and_estimate_abundance

changeset 16:e27d87a63bb2 draft default tip

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Adding profile info and exit code behavior. Making version numbers consistent. Upping test number.
author trinity_ctat
date Fri, 06 Oct 2017 10:58:53 -0400
parents c76d9b3e67b2
children
files align_and_estimate_abundance.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/align_and_estimate_abundance.xml	Fri Sep 29 13:45:17 2017 -0400
+++ b/align_and_estimate_abundance.xml	Fri Oct 06 10:58:53 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="RSEM_abundance_estimation" name="align_and_estimate_abundance" version="1.0.0">
+<tool id="RSEM_abundance_estimation" name="align_and_estimate_abundance" version="1.0.0" profile="17.05">
 
     <description>run RSEM to estimate transcript abundances</description>
 
@@ -8,7 +8,7 @@
         <requirement type="package" version="2.4.0">trinity</requirement>
     </requirements>
 
-    <command>
+    <command detect_errors="exit_code">
         <![CDATA[
         python $__tool_directory__/trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie2 --trinity_mode --prep_reference --output_dir  "subdir"