Mercurial > repos > trinity_ctat > align_and_estimate_abundance

changeset 9:b6152cc26ffd draft

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Trying to fix a syntax error.
author trinity_ctat
date Tue, 26 Sep 2017 15:14:48 -0400
parents 28f6d3b8e931
children a8fa525a2f30
files trinityToolWrapper.py
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/trinityToolWrapper.py	Tue Sep 26 14:54:33 2017 -0400
+++ b/trinityToolWrapper.py	Tue Sep 26 15:14:48 2017 -0400
@@ -26,8 +26,11 @@
     except:
         msg = "You must set the environmental variable TRINITY_HOME to the base installation directory of Trinity before running {:s}.".format(sys.argv[0])
         sys.stderr.write(msg)
-        t, v, tb = sys.exc_info()
-        raise t, v, tb
+        # t, v, tb = sys.exc_info()
+        # raise t, v, tb
+        # For some reason the above was giving a syntax error. 
+        # A simple raise shoudl reraise the existing exception.
+        raise
     else:
         TrinityPath, err_info = pipe1.communicate()
         # FIX - probably should be checking err_info for errors...