comparison trinityToolWrapper.py @ 7:78d12a725443 draft

Adding additional requirements for align_and_estimate_abundance.

6:12bc09b4a26d

            TrinityPath = os.path.join(os.path.dirname(TrinityPath),os.readlink(TrinityPath))
            print "The new path is: {:s}".format(TrinityPath)
        # Take off the last part of the path (which is the Trinity command)
        TRINITY_BASE_DIR = "/".join(TrinityPath.split("/")[0:-1])
else:
    print "Either set TRINITY_HOME to the trinity base directory, or ensure that directory is in the PATH."

# get bindir
bindir = sys.argv[0]
bindir = bindir.split("/")
if len(bindir) > 1:

7:78d12a725443

            TrinityPath = os.path.join(os.path.dirname(TrinityPath),os.readlink(TrinityPath))
            print "The new path is: {:s}".format(TrinityPath)
        # Take off the last part of the path (which is the Trinity command)
        TRINITY_BASE_DIR = "/".join(TrinityPath.split("/")[0:-1])
else:
    sys.stderr.write("Either set TRINITY_HOME to the trinity base directory, or ensure that directory is in the PATH before running.")
    sys.exit()


# get bindir
bindir = sys.argv[0]
bindir = bindir.split("/")
if len(bindir) > 1: