Mercurial > repos > trinity_ctat > align_and_estimate_abundance

diff trinityToolWrapper.py @ 7:78d12a725443 draft

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Adding additional requirements for align_and_estimate_abundance.
author trinity_ctat
date Tue, 26 Sep 2017 14:31:27 -0400
parents 12bc09b4a26d
children 28f6d3b8e931
line wrap: on
line diff
--- a/trinityToolWrapper.py	Tue Sep 26 13:58:08 2017 -0400
+++ b/trinityToolWrapper.py	Tue Sep 26 14:31:27 2017 -0400
@@ -45,7 +45,9 @@
         # Take off the last part of the path (which is the Trinity command)
         TRINITY_BASE_DIR = "/".join(TrinityPath.split("/")[0:-1])
 else:
-    print "Either set TRINITY_HOME to the trinity base directory, or ensure that directory is in the PATH."
+    sys.stderr.write("Either set TRINITY_HOME to the trinity base directory, or ensure that directory is in the PATH before running.")
+    sys.exit()
+
 
 # get bindir
 bindir = sys.argv[0]