Mercurial > repos > trinity_ctat > abundance_estimation_to_matrix
changeset 6:e673d9dd4928 draft
Changing input format type.
author | trinity_ctat |
---|---|
date | Fri, 29 Sep 2017 11:38:03 -0400 |
parents | 27fe7db7444b |
children | deed5e162203 |
files | abundance_estimation_to_matrix.xml |
diffstat | 1 files changed, 7 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/abundance_estimation_to_matrix.xml Fri Sep 29 11:26:53 2017 -0400 +++ b/abundance_estimation_to_matrix.xml Fri Sep 29 11:38:03 2017 -0400 @@ -5,25 +5,26 @@ <requirement type="package" version="2.7">python</requirement> <requirement type="package">trinity</requirement> </requirements> - <command interpreter="python"> - - abundance_estimation_to_matrix_wrapper.py + <command> + <![CDATA[ + python abundance_estimation_to_matrix_wrapper.py #for $q in $RSEM_samples ${q.file} "${q.column_label}" #end for + ]]> </command> <inputs> <repeat name="RSEM_samples" title="RSEM abundance estimates for samples"> - <param name="file" label="Add file" type="data" format="text"/> + <param name="file" label="Add file" type="data" format="txt"/> <param name="column_label" label="column label" type="text" /> </repeat> </inputs> <outputs> - <data format="text" name="counts_matrix" label="${tool.name} on ${on_string}: Counts Matrix" from_work_dir="matrix.counts.matrix"/> - <data format="text" name="tmm_expr_matrix" label="${tool.name} on ${on_string}: TMM EXPR Matrix" from_work_dir="matrix.TMM.EXPR.matrix"/> + <data format="txt" name="counts_matrix" label="${tool.name} on ${on_string}: Counts Matrix" from_work_dir="matrix.counts.matrix"/> + <data format="txt" name="tmm_expr_matrix" label="${tool.name} on ${on_string}: TMM EXPR Matrix" from_work_dir="matrix.TMM.EXPR.matrix"/> </outputs> <tests> <test>