Mercurial > repos > tomnl > track_rt_raw
changeset 7:ef046d5e534d draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 0aa10df0ec1ed71601f932cfb11d7d4d4f620d80-dirty
| author | tomnl |
|---|---|
| date | Wed, 02 May 2018 13:13:59 -0400 |
| parents | 7a95d9078691 |
| children | bf04ca943167 |
| files | anticipated_purity_dims.R |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/anticipated_purity_dims.R Mon Apr 23 10:07:52 2018 -0400 +++ b/anticipated_purity_dims.R Wed May 02 13:13:59 2018 -0400 @@ -32,7 +32,8 @@ }else{ indf <- read.table(opt$peaks_file, header = TRUE, sep='\t', stringsAsFactors = FALSE) - filename = colnames(indf)[8:ncol(indf)][opt$dimspy_file_num] + + filename = colnames(indf)[8:ncol(indf)][opt$file_num_dimspy] # check if the data file is mzML or RAW (can only use mzML currently) so # we expect an mzML file of the same name in the same folder indf$i <- indf[,colnames(indf)==filename]