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annotate macros.xml @ 9:5763234618d4 draft default tip

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"planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
author tomnl
date Fri, 04 Oct 2019 07:15:52 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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9
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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1 <macros>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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2 <xml name="text-alphanumeric-regex-validator">
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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3 <validator type="regex" message="Value may include alphanumeric characters">[A-Za-z0-9]+</validator>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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4 </xml>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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5 <xml name="text-alphanumeric-comma-regex-validator">
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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6 <validator type="regex" message="Value may include alphanumeric characters and commas">[A-Za-z0-9,]+</validator>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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7 </xml>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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8 <xml name="metfrag_scoring" token_fragmenterscore='True' token_offlinemetfusionscore='True'
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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9 token_suspectlistscore="True" token_weights="0.4,0.6,1.0">
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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10 <param argument="--MetFragScoreTypes" type="select" multiple="true" label="MetFrag Score Types"
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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11 help="The type of scores MetFrag is calculating" >
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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12 <option value="FragmenterScore" selected="@FRAGMENTERSCORE@">FragmenterScore</option>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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13 <option value="OfflineMetFusionScore" selected="@OFFLINEMETFUSIONSCORE@">OfflineMetFusionScore</option>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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14 <option value="SuspectListScore" selected="@SUSPECTLISTSCORE@">SuspectListScore</option>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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15 </param>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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16 <param name="MetFragScoreWeights" type="text" value="@WEIGHTS@" label="MetFrag Score Weights"
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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17 help="The weights of the different score types, separated with a comma and without
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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18 whitespaces. 1.0 means 100 percent." />
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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19 </xml>
5763234618d4 "planemo upload for repository https://github.com/computational-metabolomics/metfrag-galaxy commit 6bc059c100f1f968d99c1d5ad5e7259e83d386b6"
tomnl
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20 </macros>