Mercurial > repos > tomnl > lcms_interval_scheduling
changeset 2:ac50ece6573e draft
planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit d4159f1962ef3fe37dd4f3047e4050afe013c15a-dirty
| author | tomnl |
|---|---|
| date | Thu, 03 May 2018 05:21:54 -0400 |
| parents | d0233d778859 |
| children | 091367e6e25f |
| files | cameradims.R |
| diffstat | 1 files changed, 9 insertions(+), 0 deletions(-) [+] |
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--- a/cameradims.R Mon Apr 23 05:45:50 2018 -0400 +++ b/cameradims.R Thu May 03 05:21:54 2018 -0400 @@ -79,6 +79,15 @@ df <- df[df$i>opt$intensity_filter,] + +if (opt$rule_type=='extended_large'){ + if(opt$polarity=='pos'){ + opt$rule_path <- read.csv(system.file("rules", "CAMERA_rules_PosFinal_PlusLi.csv", package = "cameraDIMS"), header=TRUE) + }else{ + opt$rule_path <- read.csv(system.file("rules", "CAMERA_rules_NegFinal_PlusLi.csv", package = "cameraDIMS"), header=TRUE) + } +} + cameraOut <- cameraDIMS(data=df, params_iso=paramiso, params_adduct=paramadduct,