changeset 4:b37f97bda760 draft

planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit d4159f1962ef3fe37dd4f3047e4050afe013c15a-dirty
author tomnl
date Thu, 03 May 2018 05:20:17 -0400
parents 11ee7db33f60
children e91c400c6ca6
files cameradims.R
diffstat 1 files changed, 9 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/cameradims.R	Thu May 03 04:58:37 2018 -0400
+++ b/cameradims.R	Thu May 03 05:20:17 2018 -0400
@@ -79,6 +79,15 @@
 
 df <- df[df$i>opt$intensity_filter,]
 
+
+if (opt$rule_type=='extended_large'){
+   if(opt$polarity=='pos'){
+	opt$rule_path <-  read.csv(system.file("rules", "CAMERA_rules_PosFinal_PlusLi.csv", package = "cameraDIMS"),  header=TRUE)
+   }else{
+	opt$rule_path <-  read.csv(system.file("rules", "CAMERA_rules_NegFinal_PlusLi.csv", package = "cameraDIMS"),  header=TRUE)
+   }   
+}
+
 cameraOut <- cameraDIMS(data=df,
                         params_iso=paramiso,
                         params_adduct=paramadduct,