Mercurial > repos > tomnl > create_sqlite_db

changeset 14:69d5cb5a8e90 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e6935a8c6a3da23f47a753ab5a8159fa9d165535-dirty
author tomnl
date Sun, 13 May 2018 09:39:56 -0400
parents 4acad02faf32
children cf24c8ca7a57
files create_sqlite_db.R create_sqlite_db.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/create_sqlite_db.R	Fri May 11 06:08:10 2018 -0400
+++ b/create_sqlite_db.R	Sun May 13 09:39:56 2018 -0400
@@ -115,7 +115,7 @@
 
 db_pth <- msPurity::create_database(pa, xset=xset, xsa=xa, out_dir=opt$out_dir,
                           grp_peaklist=grp_peaklist, db_name=opt$db_name)
-
+DBI::dbDisconnect()
 print(db_pth)
 
 if (!is.null(opt$eic)){
@@ -129,7 +129,7 @@
 
   # Saves the EICS into the previously created database
   px <- msPurity::purityX(xset, saveEIC = TRUE,
-                           cores=opt$cores, sqlitePth=db_pth,
+                           cores=1, sqlitePth=db_pth,
                            rtrawColumns = rtrawColumns)
 }
 
--- a/create_sqlite_db.xml	Fri May 11 06:08:10 2018 -0400
+++ b/create_sqlite_db.xml	Sun May 13 09:39:56 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="create_sqlite_db" name="create_sqlite_db" version="0.0.9">
+<tool id="create_sqlite_db" name="create_sqlite_db" version="0.0.10">
     <description>
         Create SQLite database of an XCMS-CAMERA dataset
     </description>