Mercurial > repos > tomnl > assess_purity_msms
changeset 8:30160c2016d7 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 0aa10df0ec1ed71601f932cfb11d7d4d4f620d80-dirty
| author | tomnl |
|---|---|
| date | Wed, 02 May 2018 13:17:29 -0400 |
| parents | 5a863e3d118d |
| children | 91f38a17d82a |
| files | anticipated_purity_dims.R |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/anticipated_purity_dims.R Mon Apr 23 10:09:59 2018 -0400 +++ b/anticipated_purity_dims.R Wed May 02 13:17:29 2018 -0400 @@ -32,7 +32,8 @@ }else{ indf <- read.table(opt$peaks_file, header = TRUE, sep='\t', stringsAsFactors = FALSE) - filename = colnames(indf)[8:ncol(indf)][opt$dimspy_file_num] + + filename = colnames(indf)[8:ncol(indf)][opt$file_num_dimspy] # check if the data file is mzML or RAW (can only use mzML currently) so # we expect an mzML file of the same name in the same folder indf$i <- indf[,colnames(indf)==filename]