Mercurial > repos > tomnl > anticipated_purity_lcms
changeset 15:10380a550f68 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e6935a8c6a3da23f47a753ab5a8159fa9d165535-dirty
author | tomnl |
---|---|
date | Sun, 13 May 2018 09:36:22 -0400 |
parents | e05068fe15a1 |
children | 810decbf93b8 |
files | create_sqlite_db.R |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/create_sqlite_db.R Fri May 11 06:04:46 2018 -0400 +++ b/create_sqlite_db.R Sun May 13 09:36:22 2018 -0400 @@ -115,7 +115,7 @@ db_pth <- msPurity::create_database(pa, xset=xset, xsa=xa, out_dir=opt$out_dir, grp_peaklist=grp_peaklist, db_name=opt$db_name) - +DBI::dbDisconnect() print(db_pth) if (!is.null(opt$eic)){ @@ -129,7 +129,7 @@ # Saves the EICS into the previously created database px <- msPurity::purityX(xset, saveEIC = TRUE, - cores=opt$cores, sqlitePth=db_pth, + cores=1, sqlitePth=db_pth, rtrawColumns = rtrawColumns) }