Mercurial > repos > tomnl > anticipated_purity_dims
changeset 7:9d6346d2f547 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 0aa10df0ec1ed71601f932cfb11d7d4d4f620d80-dirty
| author | tomnl |
|---|---|
| date | Wed, 02 May 2018 13:22:42 -0400 |
| parents | 869f4fdc2aac |
| children | 8bb1ce2fa184 |
| files | anticipated_purity_dims.R anticipated_purity_dims.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/anticipated_purity_dims.R Mon Apr 23 10:15:02 2018 -0400 +++ b/anticipated_purity_dims.R Wed May 02 13:22:42 2018 -0400 @@ -32,7 +32,8 @@ }else{ indf <- read.table(opt$peaks_file, header = TRUE, sep='\t', stringsAsFactors = FALSE) - filename = colnames(indf)[8:ncol(indf)][opt$dimspy_file_num] + + filename = colnames(indf)[8:ncol(indf)][opt$file_num_dimspy] # check if the data file is mzML or RAW (can only use mzML currently) so # we expect an mzML file of the same name in the same folder indf$i <- indf[,colnames(indf)==filename]
--- a/anticipated_purity_dims.xml Mon Apr 23 10:15:02 2018 -0400 +++ b/anticipated_purity_dims.xml Wed May 02 13:22:42 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="anticipated_purity_dims" name="anticipated_purity_dims" version="0.0.10"> +<tool id="anticipated_purity_dims" name="anticipated_purity_dims" version="0.0.11"> <description>Calculate the anticipated precursor ion purity from a DIMS dataset. </description> <macros>