Mercurial > repos > tmcgowan > package_fastqc_0_11_2
changeset 0:9b285cb34c00 draft default tip
Imported from capsule None
author | tmcgowan |
---|---|
date | Fri, 12 Sep 2014 11:55:49 -0400 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 22 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Sep 12 11:55:49 2014 -0400 @@ -0,0 +1,22 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="FastQC" version="0.11.2"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.2.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/fastqc</file> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme></readme> + </package> +</tool_dependency> \ No newline at end of file