Mercurial > repos > tiagoantao > raxml

diff raxml.xml @ 39:263441e91fbd draft

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planemo upload commit 34bbc567766bf5b1986ee91bb3e46c542a45e658-dirty
author tiagoantao
date Fri, 13 Nov 2015 14:25:07 -0500
parents 2d72690325cf
children 7f7a15dc5b83
line wrap: on
line diff
--- a/raxml.xml	Fri Nov 13 13:37:34 2015 -0500
+++ b/raxml.xml	Fri Nov 13 14:25:07 2015 -0500
@@ -8,8 +8,10 @@
     ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1
     ## (-T)
     ## Cannot have --threads 1
-    #if $getVar("GALAXY_SLOTS", "1") == "1":
+    #set $slots = $GALAXY_SLOTS or 1
+    #if $slots is None or $slots == 1:
         --binary "raxmlHPC"
+        --threads 1
     #else:
         --binary "raxmlHPC-PTHREADS"
         --threads $GALAXY_SLOTS