comparison raxml.xml @ 39:263441e91fbd draft

planemo upload commit 34bbc567766bf5b1986ee91bb3e46c542a45e658-dirty

38:2d72690325cf

  <command interpreter="python">raxml.py
    ## Required parameters 
    ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1
    ## (-T)
    ## Cannot have --threads 1
    #if $getVar("GALAXY_SLOTS", "1") == "1":
        --binary "raxmlHPC"
    #else:
        --binary "raxmlHPC-PTHREADS"
        --threads $GALAXY_SLOTS
    #end if
    ## (-s)

39:263441e91fbd

  <command interpreter="python">raxml.py
    ## Required parameters 
    ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1
    ## (-T)
    ## Cannot have --threads 1
    #set $slots = $GALAXY_SLOTS or 1
    #if $slots is None or $slots == 1:
        --binary "raxmlHPC"
        --threads 1
    #else:
        --binary "raxmlHPC-PTHREADS"
        --threads $GALAXY_SLOTS
    #end if
    ## (-s)