Mercurial > repos > tiagoantao > barcode_stacks
changeset 11:2e309e9cacba draft default tip
planemo upload commit 70654da77972b29181d3b388035836b6fa84d59d-dirty
| author | tiagoantao |
|---|---|
| date | Sun, 03 Apr 2016 09:56:55 -0400 |
| parents | f153f82e6d3a |
| children | |
| files | barcode_sort.xml |
| diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/barcode_sort.xml Sun Apr 03 09:45:20 2016 -0400 +++ b/barcode_sort.xml Sun Apr 03 09:56:55 2016 -0400 @@ -1,4 +1,4 @@ -<tool id="barcode_sort_stacks" name="Barcode sorting for Stacks" version="2.0.1" force_history_refresh="True"> +<tool id="barcode_sort_stacks" name="Barcode sorting for Stacks" version="2.0.2" force_history_refresh="True"> <description>Barcode Sorting with Paired-End reads for Stacks</description> <stdio> @@ -7,7 +7,7 @@ <command interpreter="perl"> -barcode_sort.pl $barcode $f1 $f2 $barcoded $nonbarcoded $barcode_length $cut_site +barcode_sort.pl $barcode $f1 $f2 $barcoded $nonbarcoded true $barcode_length $cut_site $max_errors </command> @@ -17,6 +17,7 @@ <param name="f1" type="data" format="fastq" label="First read FASTQ" /> <param name="f2" type="data" format="fastq" label="Second read FASTQ" /> <param name="cut_site" type="text" value="TGCA" label="Cut site" /> + <param name="max_errors" type="integer" value="2" label="Maximum number of errors" /> </inputs> <outputs> <data format="fastq" name="barcoded" label="Barcoded sequences"/>