# HG changeset patch
# User tiagoantao
# Date 1459691815 14400
# Node ID 2e309e9cacba1e5311e0ff7bba7b17becd508ee6
# Parent  f153f82e6d3a841750ad46f341e73d2d5b9af6d6
planemo upload commit 70654da77972b29181d3b388035836b6fa84d59d-dirty

diff -r f153f82e6d3a -r 2e309e9cacba barcode_sort.xml
--- a/barcode_sort.xml	Sun Apr 03 09:45:20 2016 -0400
+++ b/barcode_sort.xml	Sun Apr 03 09:56:55 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="barcode_sort_stacks" name="Barcode sorting for Stacks"  version="2.0.1" force_history_refresh="True">
+<tool id="barcode_sort_stacks" name="Barcode sorting for Stacks"  version="2.0.2" force_history_refresh="True">
   <description>Barcode Sorting with Paired-End reads for Stacks</description>
 
 <stdio>
@@ -7,7 +7,7 @@
 
 <command interpreter="perl">
 
-barcode_sort.pl $barcode $f1 $f2 $barcoded $nonbarcoded $barcode_length $cut_site
+barcode_sort.pl $barcode $f1 $f2 $barcoded $nonbarcoded true $barcode_length $cut_site $max_errors
 
 </command>
 
@@ -17,6 +17,7 @@
   <param name="f1" type="data" format="fastq" label="First read FASTQ" />
   <param name="f2" type="data" format="fastq" label="Second read FASTQ" />
   <param name="cut_site" type="text" value="TGCA" label="Cut site" />
+  <param name="max_errors" type="integer" value="2" label="Maximum number of errors" />
 </inputs>
 <outputs>
   <data format="fastq" name="barcoded" label="Barcoded sequences"/>